Programme

Friday 10 November 2023
Time
Presentation title
09:00 - 09:45
Registration and Coffee
09:45 - 10:00
Opening and Welcome – Johan Mentink (RU) and Kees Vuik (TUD)
10:00 - 10:30
Keynote: Speeding up calculations for water management
Location: Plenary Room - Juliana Congreszaal
Presentation summary
Speeding up calculations for water management
10:30 - 11:00
Keynote: From multiscale modeling of knee osteoarthritis to building the virtual human twin
Location: Plenary Room - Juliana Congreszaal
Presentation summary
From multiscale modeling of knee osteoarthritis to building the virtual human twin
11:00 - 11:30
Coffee Break
11:30 - 12:00
Keynote: Application of deep learning to drug discovery: limitations and opportunities
Location: Plenary Room - Juliana Congreszaal
12:00 - 13:30
Lunch
12:00 - 13:30
Poster presentations
13:30 - 15:00
Data-driven methods
Location: Room: Juliana 1
Session details
13:30 - 14:00
Google Earth Engine as a data driven platform for sustainable decision-making - 1
14:00 - 14:15
Data-driven methods -
14:15 - 14:30
Data-driven methods -
14:30 - 14:45
Data-driven methods -
14:45 - 15:00
Data-driven methods -
13:30 - 15:00
Energy-efficient computing - 2
Location: Room: Juliana 2
Session details
13:30 - 13:55
Energy aware computing on the Dutch National Supercomputer Snellius -
13:55 - 14:15
Optimizing your code for energy-efficiency -
14:15 - 14:30
Energy-efficient computing -
14:30 - 14:45
Energy-efficient computing -
14:45 - 15:00
Energy-efficient computing -
13:30 - 15:00
Uncertainty Quantification - 3
Location: Room: Juliana 3
Session details
13:30 - 13:45
Introduction to Uncertainty in Machine Learning with Disentangling -
Presentation summary
What if we train a model to classify dogs and cats, but it is later tested with an image of a human? Generally the model will output either dog or cat, and has no ability to signal that the image contains no class that it can recognize. Similarly for systems like ChatGPT, they are not able to convey their own uncertainty, which means they cannot tell the user the confidence on their answer. This is because classical neural networks do not contain ways to estimate their own uncertainty (so called epistemic uncertainty), and this has practical consequences for the use of these models, like safety when cooperating with humans, autonomous systems like robots, computer vision systems, healthcare applications, and other uses that require reliable uncertainty quantification estimates. In this talk we will cover the basic concepts of uncertainty quantification, how to train machine learning models with uncertainty, Bayesian neural networks, how to evaluate them, and related benchmarks and evaluation metrics. This field combines concepts from Statistics into Machine Learning models, and the talk will cover methods from the state of the art, but only requiring basic background in Machine Learning and Statistics.
13:45 - 14:00
Uncertainty Quantification -
14:00 - 14:15
Application of Particle-Based Bayesian Inversion to buried medium voltage power cables in the Netherlands -
Presentation summary
In this research, we employ a particle-based Bayesian inversion algorithm to address the practical challenge of obtaining less conservative bounds for the operation of underground, medium-voltage power cables. The greater objective is to work towards a real-time enhancement of the efficiency and performance of underground cables in the Netherlands. In this project, we aim to deduce the thermal properties of the surrounding soil from an observed thermal profile, as well as quantifying the reliability (or uncertainty in) the obtained estimates. We obtained the thermal profile of the cables by in-the-field measurements in the Netherlands, collected in the last few months. This study is being conducted in collaboration with Alliander, a prominent grid operator responsible for a segment of the Dutch electricity network.
14:15 - 14:30
Bayesian Calibration and Model Comparison for Tumour Cell Dynamics Under Different Environmental Conditions -
Presentation summary
I will discuss a methodology to calibrate mathematical models for tumour cell dynamics that take into account the effects of their surrounding microenvironment. The adoption of a Bayesian framework allows to quantify the uncertainty in the parameter estimates as well as possible correlations in the parameters. We will also see how the Bayesian framework can be useful to compare different models. I will present calibration results using different in-vitro laboratory data, where the environmental factors are either nutrient deprivation or oxygen level, tissue stiffness and the presence of chemotherapeutic drugs. The analysis of the calibration results will allow to shed some light on the underlying biological mechanisms affecting tumour progression. This is joint work with Sabrina Schoenfeld (TU Munich), Christina Kuttler (TU Munich), Alican Ozkan (Harvard University) and Marissa Nichole Rylander (UT Austin).
14:30 - 15:00
Uncertainty Quantification Simulation and model uncertainty -
13:30 - 15:00
Machine learning
Location: Room: Juliana 4
Session details
13:30 - 14:00
Past, Present and Future of AI in High Energy Physics and Astrophysics: From simple models to GPT4 -
14:00 - 14:15
Machine learning -
14:14 - 14:30
Machine learning -
14:30 - 14:45
Machine learning -
14:45 - 15:00
Machine learning -
13:30 - 15:00
Multiscale modelling
Location: Plenary Room - Juliana Congreszaal
Session details
13:30 - 14:00
Computational microscopy of the Cell -
14:00 - 14:15
Multiscale modelling -
14:15 - 14:30
Multiscale modelling -
14:30 - 14:45
Multiscale modelling -
14:45 - 15:00
Multiscale modelling -
15:00 - 15:30
Coffee Break
15:30 - 16:00
Keynote: Infectious Disease Data Analytics and Modelling: Mpox, COVID-19
Location: Plenary Room - Juliana Congreszaal
16:00 - 16:30
Special Lecture: Computational Science and Engineering: Looking back and looking forward
Location: Plenary Room - Juliana Congreszaal
Presentation summary
Computational Science and Engineering: Looking back and looking forward (Stanford University) I've had a wonderful (nearly) 40 years as computational mathematician.
With the rapid increase in compute power, the development of many new tools and algorithms, and the penetration of computational mathematics in nearly every field, it's been quite the ride. Even though much seems to have changed, much also stayed the same.
I look forward to talking with you about the past (and my past), present and a little
bit also about the future of this incredible and exciting field we are all in together.
BIO:
Margot is Professor [Emerita] at Stanford University and the Executive Director of Women in Data Science Worldwide, a non-profit she spun off from Stanford campus in 2023. She obtained her Ir degree (Technische Wiskunde) at Delft University of Technology in 1990, and then moved to the US in search of sunnier and hillier places. She received her PhD in Scientific Computing & Computational Engineering at Stanford in 1996.
Before returning to Stanford in 2001 as faculty member in Energy Science & Engineering, Margot spent 5 years as lecturer at the University of Auckland in New Zealand.
From 2010-2018, Margot was the Director of the Institute for Computational & Mathematical Engineering at Stanford,and from 2015 - 2020 the Senior Associate Dean of Educational Affairs in Stanford's School of Earth Sciences.
Margot's research interests span a range of topics in computational mathematics, including numerical analysis, Computational Fluid Dynamics, data science, and topics including coastal ocean modeling, reservoir simulation, renewable energy and sustainability.
Margot is a Fellow of SIAM (Society of Industrial & Applied Mathematics), and received honorary doctorates from Uppsala University in Sweden and Eindhoven University of Technology in the Netherlands. Margot lives in sunny and hilly Oregon with her husband Paul.
16:30 - 16:45
Closure & Awards
Location: Plenary Room - Juliana Congreszaal
16:45 - 18:00
Drinks